Draw Grouped DDEGs Trajectories in Grid Plot

Source: R/draw_TrajClusterGrid.R

Group all DDEGs based on their sub-type trajectory patterns and plot their trajectories together, then layout all sub-type trajectory patterns which contains more than N genes in a grid plot. Each individual sub-grid plot is titled with sub-type trajectory pattern and number of genes included. X-axis is the time, Y-aixs is log2 transformed fitted count trajectory.

draw_TrajClusterGrid(
  master.list,
  min.traj.n = 10,
  save.as.PDF = NA,
  pdf.width = 10,
  pdf.height = 10
)

Arguments

master.list,

a list object. The output from run_TrendCatcher function, contains master.table element.

min.traj.n,

an integer variable. The minimum number of genes from the same sub-type trajectory. By default if 10.

save.as.PDF,

a string. The absolute file path to save the figure as PDF file if needed. If set to NA, will print the figure instead of saving it as PDF file.

pdf.width,

a numeric variable. The PDF file width size. By default is 10.

pdf.height,

a numeric variable. The PDF file height size. By default is 10.